PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009950-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 440aa    MW: 48287.5 Da    PI: 5.5561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009950-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09290337455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++sLq
  AHYPO_009950-RA 290 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKATVLDEIINYVQSLQ 337
                      8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16284352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.03E-11284341No hitNo description
PROSITE profilePS5088815.802286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16286346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6290337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-10292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEKEINCSNY GLMEISSEQL SNCYFHPNWE DSIPTMDQND PFESTLSSIV SSPTITSSNG  60
VGDGMMIKEL IGRLGSICDS GNNSTITSSY STPLNSPPSK FNLSSLLMMG NNSGNYPIQK  120
NLGSFDTDPG FVERAAKFSC FGSGNSNNID DGKSGMKLES GKLSRVNSDK KLGDNGEFGD  180
SREGSSVSEQ NPGAQIGVKL QNDTHSKKRK SVSRAKKIND KVEVENEESN SKRKKVDDDD  240
KEAKKENAEE NRGESNDINK EKQKNNEATK AEAPKDYIHV RARRGQATDS HSLAERVRRE  300
KISERMKFLQ DLVPGCNKVT GKATVLDEII NYVQSLQRQV EMFHSRGSPL PQAMYPIDQN  360
SAQALPFGYQ STQPLSYPLQ NGVPNGIENH FPANNMNSNG IGQNPNDDLQ SIVQMGIVQN  420
QTQNVPIGTM PNAQMKVEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673318.10.0PREDICTED: transcription factor bHLH78
TrEMBLA0A0J8CSJ60.0A0A0J8CSJ6_BETVU; Uncharacterized protein
STRINGVIT_05s0029g00390.t011e-121(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-50bHLH family protein