PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009655-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 418aa    MW: 47454.6 Da    PI: 7.6879
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009655-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.9e-067792520
                     --SGGGGTS--TTTTT CS
          zf-CCCH  5 lCrffartGtCkyGdr 20
                      C+f++rtG Ck+G r
  AHYPO_009655-RA 77 DCNFYLRTGSCKFGKR 92
                     5*************76 PP

2zf-CCCH34.63.3e-11270295126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C+ff++tG Cky + C+++H+
  AHYPO_009655-RA 270 PGQPDCDFFMKTGDCKYRAACRYNHP 295
                      5789*********************8 PP

3zf-CCCH23.41e-07363386427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C+ +   GtCkyG +C F H++
  AHYPO_009655-RA 363 KICQSYKLQGTCKYGKTCIFDHPK 386
                      68********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.5457292IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.822102130IPR000571Zinc finger, CCCH-type
SMARTSM003565.7102129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544269297IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5269296IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-7271295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868359387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5359386IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017361386IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5363386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5363384IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGSCEDMGVS FENQDEIKLG TLVSSNGTHH EDQQPTEEEV LAKQLESVVL QAIEEEEKQN  60
EGAKKSHIYP LRPYAIDCNF YLRTGSCKFG KRAENYKTTM VDTGKIDCKY FQTPGGCRHR  120
DAWKYYHSMQ KPENERLVLN FLGLPVRPSE QEFNHPGPYA AKKSNHRNSL ANDAYMRGGN  180
NLSRIYPGEK LQSCRISRGI TDLSNDITLM NSSPYDQPCY HRPMTPNPAC NQDQVKLMAR  240
LPHQILSVKK LDSSANNEQV MQSDEFPVRP GQPDCDFFMK TGDCKYRAAC RYNHPISRSS  300
KLRLPPLLFK RLYSKSQLNG QYPEQPRNRL STCIQCALNE SGLPLRPVCS QFLSLYPNIL  360
GSKICQSYKL QGTCKYGKTC IFDHPKNCSF AVFDHDNGED FSSTDPVVVD LEPCVVDN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674845.11e-131PREDICTED: zinc finger CCCH domain-containing protein 67
TrEMBLA0A0K9QFH91e-124A0A0K9QFH9_SPIOL; Uncharacterized protein
STRINGXP_010674845.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-35C3H family protein