PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009329-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 946aa    MW: 100999 Da    PI: 4.1994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009329-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000662345123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++Cg +F++++   +H r H
  AHYPO_009329-RA 23 HVCHKCGWPFPNPHPSAKHRRAH 45
                     79*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 946 aa     Download sequence    Send to blast
METQDHRTPK QSGHEGHSGG GAHVCHKCGW PFPNPHPSAK HRRAHKKVCG SLEGYMLDND  60
APEKTQLMDG EHVSDDECKT PSGKVVENVI SRRSSSGVGS RSSRSNRSEE ELFADAVTDF  120
ADGSGHGEAS DGVIQRFYSL QSVTENDISD TTVTAENGDN LHASKDGQDE LQTEDGTLSQ  180
NYISSSSTGP AIVSTAEEKE SKFELETEQS SKTSHVLNIV AVEREEIVSS KDKSDLATSY  240
NETAEVVSKY VSALRAGDNE IQSSVAIGEI AKSTEMLAGS SEVNADFSEV VDVPSNFSPF  300
ENPVQIIDPA NGIINKSRDV IEDDVSMAET YNVDVQSVPK ALPMHKDPEA TVEDVGLNRG  360
DIDTLNALGA VTYAAEEVVS GNDVAEVGDS KNIRREDNVV GSVENTENDF KQDLGQKSID  420
DFGTVGMPSQ IPEFEASDPG VSEVKSEVIT QFETKCLESD KIRSAEEQKP TISSENVSPE  480
VNSAAADNLE YASTGAANTS NDIDDGTEHV LLEIKDRELT EKDLSEEQKN PIPLENASPE  540
LVSAVADNGT NNEVNNGTED VQLEIQDREL TGKGLSGSSS VDECAINDIP PLIKEPRNDD  600
RISGGVQIHL DENEMRSAGE DNDVVNAETI PGCQLSTENV HEPLEHEKTS DHGKSETITG  660
SGDLMVGGSL PKMECTGGSS GGGEYVKCSE EASGVAGDML TKQLVAGSAV DVVPDSSSQT  720
DSLDGNWGSV SVMSAISDTP PAVDTPASNE SCASIAKANA TLEPKPVTES QQPESKTSAE  780
PYDGIRKTEG ISEIQTLEEQ QPTGSALQTA WSSSVAHAEN ASHGGTRDEI ITKVTNWSTE  840
KQHTALKTLL GEATARSRAE SPIHPNQSST SEPQTDEIPA ANNGFSKTEN SDPSSTKPTA  900
EKSEEMGKEW NSPARYPVNI KTEKKRSRSK LYWAPFLCCS SVNAR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860699.10.0uncharacterized protein LOC110799730
TrEMBLA0A0K9RL740.0A0A0K9RL74_SPIOL; Uncharacterized protein
STRINGXP_010673367.10.0(Beta vulgaris)