PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009198-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 276aa    MW: 29721.8 Da    PI: 6.5033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009198-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027182204123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  AHYPO_009198-RA 182 HECSICGSEFPSGQALGGHMRRH 204
                      78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.448120147IPR007087Zinc finger, C2H2
PfamPF139121.7E-11120144IPR007087Zinc finger, C2H2
SMARTSM003551.3120142IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.56E-7120142No hitNo description
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-7177204No hitNo description
PfamPF139121.3E-12181206IPR007087Zinc finger, C2H2
SMARTSM003550.017182204IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.803182209IPR007087Zinc finger, C2H2
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDYSTEEDFS TFTTKRRRTK RHRSLLSASA SASSTYCGAS DAAAIVTAAA SDPPNKPTAT  60
SSTSYTSSSS ASPSDHLHDV MSEVTIEEID MANFLILLSQ GLHKNTNTNT NTNTNNTVLY  120
ECKTCYRTFS SFQALGGHRT SHKKIKPPLS PSIIPSTDHH NTDNIDTKIK IVDNKVMRDR  180
VHECSICGSE FPSGQALGGH MRRHRAAAPT PSSAEISPDG STEVMDTGGG GPRNILSLDL  240
NLPAPDDQDG QPDDHMENTF VHVLPRPAPL VDCHN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848233.11e-75zinc finger protein ZAT5-like
TrEMBLA0A0K9RQ883e-74A0A0K9RQ88_SPIOL; Uncharacterized protein
STRINGXP_010689246.12e-60(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.17e-32C2H2 family protein