PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008979-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 186aa    MW: 20693.7 Da    PI: 4.5121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008979-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-10147184238
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.S CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskK.l 38 
                      +  hn+rE+ RR+++N+ + +Lr+llP + +a++kK l
  AHYPO_008979-RA 147 KLDHNAREKVRRKKLNETYLTLRSLLPDSKRAKDKKaL 184
                      678*************************8677777755 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.499145185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-7145181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-7145179No hitNo description
SuperFamilySSF474597.2E-8146182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7147184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSNPPFGSVF HDEEDDFSFP YQAPNNEEDP INFPIPPFVQ HQNTNLPTTS SSKPMLDYQD  60
LSIYDYMEDY NTSLLGQYYP NKQDTINWPV TLTEGFDQVQ QGAAEGSLSD HDMQYYNTTA  120
TTTADGQTAA AAVAVVSGVG EGSLSKKLDH NAREKVRRKK LNETYLTLRS LLPDSKRAKD  180
KKALS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021770033.16e-53transcription factor bHLH160-like isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.12e-06bHLH family protein