PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008630-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 288aa    MW: 31767.2 Da    PI: 8.3486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008630-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023111133123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  AHYPO_008630-RA 111 FSCNYCQRKFYSSQALGGHQNAH 133
                      89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-6108138No hitNo description
PROSITE profilePS5015711.427111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEKKQQRKEH PKMEETELEP CLSGTSSSIS AAQGVPRLFG RPLKYQQQKA AIESQDKDQN  60
QDQEKETASW NESDSCHEYN GELNLIDGIK VGSSQSSTET PQGSESEHRV FSCNYCQRKF  120
YSSQALGGHQ NAHKRERTIA KRNQRIGATI AATAAAFGHP YIHHQQQPSY SNIASLPLHG  180
SLNRSLGIQV HSMIHKQPPS NMSPAMSSSR NVYGHHGWLR LPIEQQPAVG KLVLDTYHSS  240
VPVGPTSRGG AGRFGVDEGV TNFWWSGDIP IKTNHEDSTK LNLSLSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665880.11e-120PREDICTED: zinc finger protein 3
TrEMBLA0A0K9QCL91e-111A0A0K9QCL9_SPIOL; Uncharacterized protein
STRINGXP_010665880.11e-120(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.16e-40C2H2 family protein