PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007243-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 241aa    MW: 26707.5 Da    PI: 7.1444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007243-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08128175455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+++Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  AHYPO_007243-RA 128 SHSIAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 175
                      8*************************9....35599999**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.79E-9122179No hitNo description
SuperFamilySSF474592.36E-16122193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.085124174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-16126187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5128175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-8130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGMGLYTIND QSLTENQSIK DQDQDQDQDH PGLSESASII SSRTGNGNES NNSITINNKR  60
KAQDLGEESS TSLHSSPLHP IPIPIPNPKK NSTNRGKRSK KSNGESKTDG NAKEVVHVRA  120
QRGQATDSHS IAERVRRGKI NERLRCLQDI VPGCYKTMGM AVMLDEIINY VQSLQNQVEF  180
LSMKLTAASQ YYDFNSENEH IDKKQKIKAS SNSDEAQGII NKGGYDESTI YNLYQSGWPF  240
*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021759301.11e-82transcription factor BEE 3-like
SwissprotQ8GWK74e-57BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0K9Q9H37e-79A0A0K9Q9H3_SPIOL; Uncharacterized protein
STRINGXP_010677996.15e-81(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-57BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]