PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006057-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 548aa    MW: 59859.6 Da    PI: 5.6506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006057-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11357399754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  AHYPO_006057-RA 357 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 399
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16353419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-14356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9356399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.29E-13357403No hitNo description
Gene3DG3DSA:4.10.280.106.7E-16357412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.87E-7469529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MLSRTNSVVW MGERGEEEDS SVTWNRNPCD LGLNNGGENT QDIVDNVDVT SLSSFKSMIE  60
VENEWYSTMA NPNSINFSTA NEGTDNLLLN PIDSSSSCSA SPSVFNSNTL DPSQLSYLFS  120
SKPTIFNSPL NQNFGIGCGP SNGFFQETFH HHQISDLVNR HNNGVFTGFT EFSSQNDMGS  180
PNLGHNPQFS ATHLVQLGEN EGFSSGFRFK PFEEGLGNSM FVNRTSKLLK PLDNSPPIGA  240
QPTLFQKRAA LRKNSFGGNL LDSGPDSGLI SNGDEGDCSK LNSSEENGKK RKICNVGVLD  300
SVSIDGSGFN YDSDDFTENN NFIDGAKNGG TNSNNNSTVT GVDSKGKKKG LPAKNLMAER  360
RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIEYLKELL QKINDLHNEL ESTPPSSLNQ  420
TTNCHPLTPT LPNFPSRIKE ELCSSSLPSP NGQPAKIEVR LREGRAVNIH MFCGRRPGLL  480
LSTMRTLDGL GLDVQQAVIS CFNGFAMDIF RAEQSKDGQD LHPDQIKALL LDLATFHGST  540
MANNCNM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346364KKKGLPAKNLMAERRRRKK
2358365ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678348.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-119ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0J8CAX30.0A0A0J8CAX3_BETVU; Uncharacterized protein
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-119bHLH family protein