PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005915-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 248aa    MW: 26654.5 Da    PI: 5.0367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005915-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.7e-061091313355
                      .TTS-STCHHHHHHHHHHHHHHH CS
              HLH  33 apskKlsKaeiLekAveYIksLq 55 
                      + s+K +Ka++L +A+eY+k+Lq
  AHYPO_005915-RA 109 NMSEKTDKASMLDEAIEYLKQLQ 131
                      5789******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-7107143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-7108140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-5111135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MADLSPPHQP PSSSANFGVE SDDISSLLHT LLHNSSQPST SSSLPQLPGS AAFSQSPALF  60
DSSFPFSKGY YTSMEGIDDV ECHSEEEARM KSAAFKNSSK RSRAAEVHNM SEKTDKASML  120
DEAIEYLKQL QLQVQMLTLR NGSSSHPFYL PVAVQPPPGP FNEANNNGVG GSFTADEETS  180
MQAMFNLSSK PASDYKQAFV SDPSMTVNYR PFHSSMPAKV LCKDPALHQL QLDMSQCGQS  240
SSSGVSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021722565.12e-99transcription factor ALC-like
TrEMBLA0A0K9QBM43e-93A0A0K9QBM4_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010688822.16e-71(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.33e-20bHLH family protein