PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005898-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 497aa    MW: 54274.3 Da    PI: 6.227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005898-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-056789123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C++C+k F r  nL+ H r H
  AHYPO_005898-RA 67 FICEICSKGFQRDQNLQLHRRGH 89
                     89*******************88 PP

2zf-C2H210.60.0018144166123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ C+k +  +s+ k H +++
  AHYPO_005898-RA 144 WKCERCSKKYGVQSDWKAHVKVC 166
                      58*****************9987 PP

3zf-C2H212.50.00043174192523
                      TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                      dCg++Fsr++++++H   +
  AHYPO_005898-RA 174 DCGTVFSRRDSFVTHRAFC 192
                      9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.8E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.9E-66689No hitNo description
PROSITE profilePS5015710.7836789IPR007087Zinc finger, C2H2
SMARTSM003550.0476789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355230109139IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.9E-6139164No hitNo description
SMARTSM00355160144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAQLELDNSL SSTYTNQQAQ EHHDELCLDQ QLQPPPSKKR RNQPGMPDPE AEVIALSPTT  60
LLATNRFICE ICSKGFQRDQ NLQLHRRGHN LPWKLRQRSP TQPVKKRVYI CPEPTCVHHN  120
PTRALGDLTG IKKHFCRKHG DKKWKCERCS KKYGVQSDWK AHVKVCGSRE YMCDCGTVFS  180
RRDSFVTHRA FCDALAKESD LPIGNVPSLV GPSPQPCEMQ ENEVVVKSTT SSATCSTSSI  240
SNYKDIDHNN DNDNMGFHTS MFAPLSGFTP SISHNPASSF SDLLTTSSNS NNLSTYPIET  300
SSNSNNLSTY PIEPLPVLTL SPLYQFQTPA SLLQDHDNYS AVLPQQPVMS ATALLQKATQ  360
TGAAATSGSS RFCGFDLISQ DQNTENSSVK LENQGTFPDR IGLSLPSSRS FDESGPMMSD  420
PSTYFGSTPT TLDFLGLGNS SDAAHAYLAS IDSTVDVAGA TCESGNESIV KVSWDAQIAQ  480
RAPSNSVEGE SGYEPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-29140198361Zinc finger protein JACKDAW
5b3h_F1e-29140198361Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664668.11e-124PREDICTED: protein indeterminate-domain 2 isoform X2
SwissprotQ9LVQ71e-114IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A438K1P91e-123A0A438K1P9_VITVI; Protein indeterminate-domain 1
STRINGVIT_18s0001g12220.t011e-123(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-103C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]