PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005581-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 332aa    MW: 37153.1 Da    PI: 6.2845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005581-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11160188331
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                      ++h+e+ErrRR+riN+ +++Lr+llP+ +
  AHYPO_005581-RA 160 KSHSEAERRRRERINNHLAKLRSLLPSTT 188
                      79************************963 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.601157219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-8160191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-9160188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-8161198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.9E-5229285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MNSNTSENIN HQQQQQDHHH QQDQQNNIIT QNNNSLEMQQ YHHHHHQSGM VFPDLSSNPH  60
PIQSQPHILP WDFSQIHSFP QTHDPFFFPS SSSYGGLFTR RPSNSLQFAY EGCSSDHLRL  120
LSDALGPMVQ PGSAPFGLQA ELNKMTAQEI MDAKALAASK SHSEAERRRR ERINNHLAKL  180
RSLLPSTTKE LRRQTSMIAE TSVIPTETDE LTVDQASEEH DGKFIIKASL CCDDRSDLLP  240
DLIKALKTLQ LKTLKAEITT LGGRVRNVLV VTHEPNSNNQ LEDDENEEDS SQCSISSIHE  300
ALKAVMEKSG GDDQSNSGNP KRQRTANICI S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681418.11e-167PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y16e-87BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0K9QFP51e-146A0A0K9QFP5_SPIOL; Uncharacterized protein
STRINGXP_010681418.11e-167(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]