PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005430-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 286aa    MW: 31749.4 Da    PI: 7.762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005430-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07174201431
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkas 31 
                      +h+ +Er RR++iN ++  L+el+P + 
  AHYPO_005430-RA 174 SHSLAERARREKINARMKLLQELVPGCN 201
                      8************************973 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.13E-4168204No hitNo description
SuperFamilySSF474594.71E-8168202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.769170222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-9173202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-5174201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MENYQFGEEF QKLMIAPDNG NGNGNGNGNS FTALLELPPN QALELLTDDF NGGGSGDVVK  60
RHRISAFNHS LASFPAFPSN RALIERAAKY SVFASENNSM ESKVKVELLD SGSNPNSSDP  120
TAGSESEKEK PLKRKEREKK GKGASKKSKT TTLEDGEKLP YVHVRARRGQ ATDSHSLAER  180
ARREKINARM KLLQELVPGC NKAESAMDCS FPNMAMQFPV MWPEIHHNGD RQQFPQQWHT  240
ESLSRPMWIK EENHLSFVAS ENPRMSYDSP ANSASLHSSQ LKTDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724053.11e-123transcription factor bHLH48-like isoform X1
SwissprotQ3EAI13e-39BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A0K9QKV51e-121A0A0K9QKV5_SPIOL; Uncharacterized protein
STRINGXP_010672733.11e-121(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]