PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005185-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 175aa    MW: 19758.1 Da    PI: 4.3355
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005185-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000342183955
                     TCHHHHHHHHHHHHHHH CS
              HLH 39 sKaeiLekAveYIksLq 55
                     +Ka++Le Av+Y+k+Lq
  AHYPO_005185-RA  2 DKATVLEDAVRYVKELQ 18
                     8***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-5139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-7130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDKATVLEDA VRYVKELQQE VKTLEEETKR KTIESAMLLG STSSSRSSLL SNQEQDQNNT  60
YYYYSSNIQD YDDDDDDDDD DDEGCPSSIL EMEARFSYKD VLIRIHCQNK NGILQDFISH  120
IEKLHLLVIN SSALLFGPAS LDATIIAQMG GEFSMTAKDL VRHLHAALLK RQLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691802.12e-49PREDICTED: transcription factor bHLH25-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-24bHLH family protein