PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004220-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 315aa    MW: 34793.1 Da    PI: 6.4413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004220-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.1e-052062431254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A++YIk L
  AHYPO_004220-RA 206 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 243
                      677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.074194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-12204259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.32E-6204247No hitNo description
Gene3DG3DSA:4.10.280.105.0E-9208252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNSNNHEDGS PSIAMTSSSN NSSDSSTITY EGTITTSFPI NSSASYLIQS LFDDFDDQSQ  60
APQSQSIPHH DHQQFINPSN FNSLDSTNHD HHHHQNPNQS PDILSQLQNN EIDEKINSLM  120
NNCHEQILGG HFSPTTLDNI RASLMNSLQS RSRGPTSSNQ KSKQSCGNFG SKVKCDSKSN  180
CSSKDQPQAK RPRIETPSPL PTFKVRKEKL GDRITALQQL VSPFGKTDTA SVLHEAIDYI  240
KFLHDQVNVL STSYLKSGTA IQQQGYDDLK NNEEGKQDLR SKGLCVLPIS STYPMAQETP  300
VDFWTPTFGG TTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665766.11e-108PREDICTED: transcription factor bHLH112
TrEMBLA0A0J8B6H71e-108A0A0J8B6H7_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-52bHLH family protein