PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003478-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 545aa    MW: 59075.6 Da    PI: 5.3622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003478-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11354396754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  AHYPO_003478-RA 354 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 396
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-17350422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9353396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-14353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-16354409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.23E-13354400No hitNo description
CDDcd048738.69E-7466526No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MLSGPNSVGW IGDRGDEEDS SLTWNRNPCE NREDIVDNVD VASLSSLKSM LEVENDWFNT  60
NINPNSINFS TNESTDNLLL NPIDSSSCSA SPSVFNSTTL DPSSVPYLFS SKPAIFNNPL  120
PQGFGLGCGT SNGFFQENHT HPQIPDFLNR GNGGVLGGFS DFSPQNDMGS PNLGNNPHFS  180
STHLVQLPEN EGFKSGSSSV SRFQGFEEGL GNSMFVNRTS KLLKPLDNSA PVGAQPTLFQ  240
KRAARKNVFT ANNSGNLLNS GTDSGLISNG VEGDCSKFNS GEENDKKRKF GNVGVLDSVS  300
IDGSGFNYDS DDFTENNNFS DGPKNGGTNS NNNSTVTGGD SKGKKKGLPA KNLMAERRRR  360
KKLNDRLYML RSVVPKISKM DRASILGDAI EYLKELLQKI NDLHNELEST PPPSLTQTTN  420
LHPLTPTLPN LPSRIKEELC PSSIPSPNGQ PARIEVRLRE GRAVNIHMFC GRRPGLLLST  480
MRTLDGLGLD IQQAVISCFN GFAMDIFRAE QCKEGQDLHP DQIKALLLDL ATFNGSTVAN  540
NCNM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343361KKKGLPAKNLMAERRRRKK
2355362ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678348.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-122ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0J8CAX30.0A0A0J8CAX3_BETVU; Uncharacterized protein
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-113bHLH family protein