PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002930-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 353aa    MW: 38654.6 Da    PI: 4.7176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002930-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55.1e-13116166255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YI++Lq
  AHYPO_002930-RA 116 KVSHITVERNRRKQMNEHLSVLRSLMPCF---YVKRGDQASIIGGVVDYISELQ 166
                      689*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.98E-13112170No hitNo description
SuperFamilySSF474596.54E-17113185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.202114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-13116177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10116166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-11120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGDNDIASLF EEQDHLGDPT FSGLATTQDD DLFSIFDALE SLRETSKMGG GGGGGCGGDE  60
DSTTKGFMFQ DFSETEAEFD AFEAEVGDNE HEQPKSKRAK ISSSDENGVV GREGTKVSHI  120
TVERNRRKQM NEHLSVLRSL MPCFYVKRGD QASIIGGVVD YISELQQLLQ SLEAKKQRKV  180
YNEVLSPRLV SSPRTLPQVL SPRKPPLSPR LNLPISPRTP QPSSPYRARM NFSPSLATPI  240
DLSPTSSSSS LNDCVANELV ANSRSPMAEV EVKFSGPNLL VKTVSPRIPG QILKIISILE  300
YLSLEILQIN ISTIEETMLN AFTIKIGIEC QLSAEELAHQ IQQTFCSTPL FN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671516.11e-168PREDICTED: transcription factor SPEECHLESS
SwissprotQ700C71e-99SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A0K9RCJ91e-173A0A0K9RCJ9_SPIOL; Uncharacterized protein
STRINGGLYMA06G13081.11e-113(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-71bHLH family protein