PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002761-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 242aa    MW: 27307 Da    PI: 5.4408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002761-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.000113885253
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                     + ++ erEr  R+++N  f++L ++l  +    ++ + Ka++L ++++ +k+
  AHYPO_002761-RA 38 KIMKAERERLKREQLNVLFNKLASVLELN----QENNGKASVLNETIRLMKE 85
                     66789*********************997....5778899999999998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000830.001063486No hitNo description
PROSITE profilePS5088811.1473686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-837103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-441110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGSDVQDDQI LNEESDLAEV VEECSHPNKR KCVKVPKKIM KAERERLKRE QLNVLFNKLA  60
SVLELNQENN GKASVLNETI RLMKEMFCNI QSLRKENATL LSESQYMTAE KDELKEENTT  120
LEVQIKNMQN ELKERIGQSK PDLNVSPPEC WQTDMPSHFV EAHRPQMTPT DPSTQQSPIL  180
GPLYVIPFNP DLQAFQKIDA ASANSPITVS KPHARYPTPA DSWPLQLLPK QPKTAVTQSS  240
S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720461.11e-122transcription factor bHLH47-like
SwissprotQ9SN747e-47BH047_ARATH; Transcription factor bHLH47
TrEMBLA0A0K9RH891e-112A0A0K9RH89_SPIOL; Uncharacterized protein
STRINGXP_010685315.11e-120(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.33e-49bHLH family protein
Publications ? help Back to Top
  1. Rodríguez-Celma J, et al.
    The transcriptional response of Arabidopsis leaves to Fe deficiency.
    Front Plant Sci, 2013. 4: p. 276
    [PMID:23888164]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Martínez-Trujillo M, et al.
    Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.
    Plant Mol. Biol., 2014. 86(1-2): p. 35-50
    [PMID:24928490]
  4. Li H,Wang L,Yang ZM
    Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency.
    Gene, 2015. 554(1): p. 16-24
    [PMID:25300251]
  5. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]