PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002424-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 316aa    MW: 34561.4 Da    PI: 4.8078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002424-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-084186554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +  rE++RR r+N+ f eL   l  +     +K++Ka+iL+ +++ + +L
  AHYPO_002424-RA 41 KAGREKQRRCRLNEQFIELGNTLDAD----RPKNDKATILTDTIQMLTDL 86
                     5669*******************997....79************998777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1235106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.963686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-1236109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.88E-63790No hitNo description
PfamPF000103.9E-64186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-54292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNLIPSDGVY LPLPSNPSSE FEIANCEMDS EDPTAARKLQ KAGREKQRRC RLNEQFIELG  60
NTLDADRPKN DKATILTDTI QMLTDLTAEV NKLQAEYAAL SEEARELTQE KNDLREEKAT  120
LKSDIDRLNV QCQQRVGSTY PWVAMDSVLP HPSSYAYHMP IPVASAPSYP PMPMHIPMQP  180
YSFFGSANPG MFANPCSTFV PYMAPNPPAE QPSTQEVSPS TQPGSRTQVS AKQGVGTSSD  240
RQERRSSKKE DSDDVPTNLE LKTPGSTTDE DMETNRKKLV QEKSIAAEGS SSRCSSHSVQ  300
DSSSSSIVGG GKNIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690444.11e-142PREDICTED: transcription factor bHLH121
SwissprotQ9LT234e-74BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0K9QB231e-128A0A0K9QB23_SPIOL; Uncharacterized protein
STRINGXP_010690442.11e-141(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.15e-77bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]