PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002318-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 367aa    MW: 40407.4 Da    PI: 6.2667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002318-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000492322701255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  AHYPO_002318-RA 232 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 270
                      6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.553220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-10230284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-5230274No hitNo description
Gene3DG3DSA:4.10.280.101.3E-7230291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMAGNPNNWW NMQHNNIRLS STSDDQQHET EVNPTINLLI SQTHPNNSLL TPLQFLHAGS  60
SSSSSSLLPF LSSAEPHTQD HFPHSWSQLL MGGMGSEEER YNDPINEYDE ARRVLNEGVQ  120
LDIKQEITTQ NNNNNLELYG NQFHNNEEQD HQVGVSNTNN RAASTNWTQI IPVSSPKSCI  180
TTLNTNTNNN TNNNNNNNNN MLDFSTNKST NGGVPPKKPR VQSSSTPPLK VRKEKLGDRI  240
TALHQLVSPF GKTDTASVLL EAIGYIRFLQ GQIEALSSPY MGNNHASAMN QHVVHGERNC  300
LFPDHPGQLL NDSCLKRRGA PNQEDNKDGS KDLKGKGLCL VPISCTQLVG SENGADYWAQ  360
SLGGGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691374.11e-151PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D13e-60BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0K9RUD31e-144A0A0K9RUD3_SPIOL; Uncharacterized protein
STRINGXP_010691374.11e-150(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]