PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002198-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 168aa    MW: 19652.7 Da    PI: 6.6231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002198-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.1e-066286730
                     HHHHHHHHHHHHHHHHHHCTSCC.C CS
              HLH  7 erErrRRdriNsafeeLrellPk.a 30
                       Er+RR+++N++++ Lr ++P+  
  AHYPO_002198-RA 62 VSERNRRKKLNERLFALRAVVPNiT 86
                     57********************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-1146111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.93755110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-658101No hitNo description
SMARTSM003534.8E-561102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-861114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDTFGDDYQH QLYWETDFNT IYNLHTQQFD CLAFDDALSS YYDYDSSSPD GSGSSMASKN  60
IVSERNRRKK LNERLFALRA VVPNITKDAI GYIKELHDQE RRIKSDISDL EHRRSNNGKF  120
DNNSCSIMDF DQELPPLIIK SKKKRVDHRK QYYDHSNGCC RSSPIHDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667303.14e-52PREDICTED: transcription factor bHLH35
TrEMBLA0A0K9R5K35e-60A0A0K9R5K3_SPIOL; Uncharacterized protein
STRINGVIT_11s0052g00100.t012e-42(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.42e-20bHLH family protein