PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001667-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 586aa    MW: 66725.6 Da    PI: 9.1817
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001667-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.4e-09563585326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++Cr++++ G+C++GdrCkF Hg
  AHYPO_001667-RA 563 QKPCRYYLQ-GYCHHGDRCKFKHG 585
                      689******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.6E-695141IPR003034SAP domain
SuperFamilySSF689063.3E-695141No hitNo description
PROSITE profilePS508009.866106140IPR003034SAP domain
PfamPF020373.1E-7108140IPR003034SAP domain
Gene3DG3DSA:4.10.1000.103.1E-5558585IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6559584IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549560585IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6563585IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MAYCSFNAKT PVDSDDYIEM DYSDGQFFDS DDSEDVPTYI VDLDKAQSKL SSLSSKSNSN  60
SSKESTKSEV NDGVVTNLEE KSQSKLGIED KKCFEEVQRL IDGGKVEELK LEQCKVYLRK  120
HGLRLTGKKD ILIQRIKEHL EIINGGGEKK YPESSFLLNC KGDACTGDIV MFQQTVYEGY  180
SIVSRSAIGA PCGKRTVAGR IVKESYGAAK QQHTFTVEVL WSKGEKPLPP LHPLLIKGRN  240
LYKLNTLRQR WEDESQRQRV LSEKHNRGFI ARSNREVRIQ VKMSRQMLKD ARTFSKEGQH  300
SCQEKNHEHA KDHVGSKDPK QQTVAMQTQK LQSNHVQNFK AAAQLEKNSN TGLTRSQPPL  360
LNGPNDPTSQ GCFSYRDPNF QHSRPTNFTS WAFSHFSDKF QQQHYWEYKE NVNHEHAKDH  420
VGSKDPKQQT VIMQIQKLQS NHVQNLKAAA QLEKNSITGS TRSQPPQLNG PNDQTSRGCL  480
SYRDPNIQHS GPANSISVAY SRFPDKFQQQ HYREYKENVP QPGLHPCLFQ MNVSNDETNR  540
QLLVSNGASS LNFPGIYHHK ERQKPCRYYL QGYCHHGDRC KFKHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716070.11e-143zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A0K9QHJ21e-131A0A0K9QHJ2_SPIOL; Uncharacterized protein
STRINGXP_010685268.11e-137(Beta vulgaris)