PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001524-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 282aa    MW: 30539 Da    PI: 5.7205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001524-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09161208455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  AHYPO_001524-RA 161 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 208
                      8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.70E-10155212No hitNo description
SuperFamilySSF474594.97E-17155223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17157222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-7161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-10163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDPPLINEGS FATSNPSLSE IWPFNHGGNC DGNEMLGLKI GNGGFVNGLI DGLFKGDGSM  60
EESTVTGQSG SLDCSNGRKR RENFSEDESS KLVSTICSAN ELKYSNAKRI KTSCSQDENG  120
SSKVRGETSS ASGNNNHAEK PAEPPKDFIH VRARRGQATD SHSLAERARR EKISERMKIL  180
QDLVPGCNKV IGKALVLDEI INYVQSLQRQ VEFLSMKLEA VNSGVIPSSS SFPSKDVNLL  240
EVSSFDPNGM MFRTQAARDF AAGQQSEWLH MQLGGNFDQT A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678640.11e-141PREDICTED: transcription factor bHLH79
SwissprotQ9LV171e-75BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A0J8F3X71e-141A0A0J8F3X7_BETVU; Uncharacterized protein
STRINGPGSC0003DMT4000628444e-98(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.12e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]