PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000754-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 248aa    MW: 28186.8 Da    PI: 5.531
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000754-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-1195144355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++  rEr RR+++N++f +L ++l +    ++ K +K +iL  A++ +k+L+
  AHYPO_000754-RA  95 KSKAFRERERREKLNDSFLNLSSILEPG---RAAKTDKLAILSDAIRVVKQLR 144
                      567789*********************9...9*******************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.44692143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-792148No hitNo description
SuperFamilySSF474593.66E-1396168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-896143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-898149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1399165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGSFDDSAWD LPLNYFIDDV SSPNFSWVDP SSSINIDFSQ TGNMMQELES EGQHPRKSSC  60
IEIDFSRISS VVKEQECELE CSKKRGRATL CSKSKSKAFR ERERREKLND SFLNLSSILE  120
PGRAAKTDKL AILSDAIRVV KQLRIEAEEY KEENKKLQEE IESLKAEKNE LRDEKSTLKA  180
EKEKMEQQMK AMSIPGAGMI PSYPTAYQAG PNKMALYPSY GMFPMWHYLP PSTRDTSRDH  240
ELRPPAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00102PBMTransfer from AT4G14410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671056.11e-153PREDICTED: transcription factor bHLH104
SwissprotQ8L4672e-69BH104_ARATH; Transcription factor bHLH104
TrEMBLA0A0K9QQQ41e-144A0A0K9QQQ4_SPIOL; Uncharacterized protein
STRINGXP_010671056.11e-152(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.23e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  3. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  4. Wang C,Yao X,Yu D,Liang G
    Fe-deficiency-induced expression of bHLH104 enhances Fe-deficiency tolerance of Arabidopsis thaliana.
    Planta, 2017. 246(3): p. 421-431
    [PMID:28451750]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  7. Min JH, et al.
    A basic helix-loop-helix 104 (bHLH104) protein functions as a transcriptional repressor for glucose and abscisic acid signaling in Arabidopsis.
    Plant Physiol. Biochem., 2019. 136: p. 34-42
    [PMID:30639920]