PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000424-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 441aa    MW: 47974.1 Da    PI: 4.7418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000424-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11258300754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  AHYPO_000424-RA 258 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 300
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-17254324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9257300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-14257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.30E-13258304No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15258315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.83E-7369429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MLSTSNGVAC MEDTGEQYDT VSWTTRPPLD GGDWYLTAGN IINPPPLQLN PDNMILPCTM  60
QTTSSSSSQL PHSSFLNPLE FSSFNFPYEP GSAFLPPVQN HQPSSYFELS GFDGIDPNRV  120
KMLMPLDMGH TIGLPPVEPS LFQKRVMMGS GLTGKRKRDV VNVEEDEVEG SFGIPMMNYD  180
TDEQIEEADG EGNTVGINSA NTINDSDNGH FSCDFDGGFS NSKTNSIVTG GGGEGEGEGE  240
GEGKGKGKRK GLPAKNLMAE RRRRKKLNDR LYMLRSVVPK ISKMDRASIL GDAIDYLKEL  300
LERINELHNE LESCNQGPLM PTTSHPSTLI QPPLPCQVKE ELSPSSLPGL KNQHARIEVS  360
AREGRAVNIH MFCARKPGLL LSTLRALDNL GLDIQQAVIS CFNGFALDVF QAKQCGEGNE  420
ILPEQIKAVL LDSAGFHGVM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247265KRKGLPAKNLMAERRRRKK
2259266ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682978.11e-131PREDICTED: transcription factor ICE1
RefseqXP_010682979.11e-131PREDICTED: transcription factor ICE1
SwissprotQ9LSE22e-98ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0K9QS480.0A0A0K9QS48_SPIOL; Uncharacterized protein
STRINGPOPTR_0012s10780.11e-105(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-98bHLH family protein