PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000421-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 263aa    MW: 28406.4 Da    PI: 6.2962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000421-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10144191455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  AHYPO_000421-RA 144 SHSLAERARREKISERMRILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 191
                      8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.30E-10138195No hitNo description
SuperFamilySSF474598.77E-18138208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-18140208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.726140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-8144191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDPQSSLMNE TTSFNLSEIW PIQMNAGAGG AALDLRRSPF GPNSGWFVEP GSNLDVSGND  60
GGAARKRREN VEDGDSGQGG VCNGMSDSDG KRLKSTGSGD DSQNPKSSGV ENSGKGAEQK  120
SKQTTEPPKD YIHVRARRGQ ATDSHSLAER ARREKISERM RILQDLVPGC NKVIGKALVL  180
DEIINYIQSL QRQVEFLSMK LEAVNTRIPP GIEGFPSKDF GQQAFDSSGM GYGSQPPRDQ  240
YVRGSSPDWL HMQIGGGFDR QT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849932.11e-151transcription factor BHLH089
SwissprotQ84T085e-72BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A0K9RFZ01e-150A0A0K9RFZ0_SPIOL; Uncharacterized protein
STRINGXP_010683313.11e-150(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-86BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]