PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000106-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 281aa    MW: 31070.7 Da    PI: 7.3043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000106-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-07171197430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                      +h+ +Er RR++iN ++  L+el+P +
  AHYPO_000106-RA 171 SHSLAERARREKINARMKLLQELVPGC 197
                      8************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.05E-4165199No hitNo description
SuperFamilySSF474594.58E-8165199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.381167232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-8170199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-5171197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MENYQFGEEF QKLMIAPENG NGNGNSFTAL LGLPPNQAME LLTEDSAGIG GGGDVVKRHR  60
ISAFNHSLSS LPAFPSNQAL IERAAKYSVF ATEKDSLELK VKSEPLDSGS NPNCSDPTGG  120
SESEKEKPLK RKEREKKGKG SAKKNKTTTS EDVEKLPYVH VRARRGQATD SHSLAERARR  180
EKINARMKLL QELVPGCNKV ESAMDCNFPN VAMPIMWPEV HLNADRQQFQ QQWHADSSSH  240
QVWVKEENHR NLVPSENSHM SYDSPANSAS LPSSQLKMEL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724053.11e-130transcription factor bHLH48-like isoform X1
SwissprotQ3EAI13e-41BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A0K9QKV51e-118A0A0K9QKV5_SPIOL; Uncharacterized protein
STRINGXP_010672733.11e-128(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]