PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9974s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 387aa    MW: 42699.2 Da    PI: 5.7227
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9974s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.89e-35195286298
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvs.ksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                          lfqrlwseeDeivlLqG+idf   tgks++dd+++f+e++k+sisf+v+  +q+ +Kir+LK+K+  k+k        +f+k+hd+k+fe
  Araha.9974s0003.1.p 195 LFQRLWSEEDEIVLLQGMIDFCGVTGKSVFDDMNGFFEKLKDSISFDVKgVNQFHNKIRSLKNKYVVKKKS------GDFTKDHDKKCFE 278
                          79**********************************************8469*************999888......78*********** PP

               DUF573  91 lskkiWgs 98 
                          l+k+iWgs
  Araha.9974s0003.1.p 279 LAKMIWGS 286
                          ******95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.0E-26196285IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAKKKQSQPL ATPSAAKKPS EVASTSKKPS EIPSPVKKPS GVTSPVKKPS GVTSPAKKPL  60
EVASPAKKPL EETSTTAKKK QPEPVKNPLP ESSSEEEEEE DSSSDEEEEP SKDSGEENPE  120
TAVVTNQSSV SELESETESE SDTETEPTAK TPTPAAPPAS LNKKRQSEGE PSTEEVNVSK  180
RAKTESETET AKKQLFQRLW SEEDEIVLLQ GMIDFCGVTG KSVFDDMNGF FEKLKDSISF  240
DVKGVNQFHN KIRSLKNKYV VKKKSGDFTK DHDKKCFELA KMIWGSDVDA TLVKSKRKIK  300
VDDSLKVDGV KVECDWFVRS FLVGAFKNLG AGVDEETLKE KWSLVPVKMR KRIEEKIKSV  360
QANEFKLMLQ KLEVLHEVSS MMAKSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868656.11e-173hypothetical protein ARALYDRAFT_916208
TrEMBLD7MJ891e-173D7MJ89_ARALL; Putative uncharacterized protein
STRINGscaffold_703950.11e-173(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00610.13e-78DNA-binding storekeeper protein-related transcriptional regulator