PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9818s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 155aa    MW: 17665.2 Da    PI: 6.5133
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9818s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-0592114123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F+++  L  H++ H
  Araha.9818s0001.1.p  92 FECHYCFRNFPTSQALGGHQNAH 114
                          89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-688119No hitNo description
PfamPF139129.7E-691116IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.9992119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0010091Biological Processtrichome branching
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDEAARETET QDFMNVESFS QLPFIHRPKD KNPKPIRVFG KDFTGGGFSS TNGQEDYSDP  60
YQTKDKKQEE EEEDQIGDNS KDNNSISNNR RFECHYCFRN FPTSQALGGH QNAHKRERQL  120
AKRVGGSAAQ NRMSSYRYGL SSNLQDHVSL DLHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026861e-149CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankBT0096761e-149BT009676.1 Arabidopsis thaliana At3g58070 mRNA, complete cds.
GenBankBT0033401e-149BT003340.1 Arabidopsis thaliana zinc finger-like protein (At3g58070) mRNA, complete cds.
GenBankAL1370811e-149AL137081.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F9D24.
GenBankAL1329771e-149AL132977.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878184.18e-80hypothetical protein ARALYDRAFT_486259
SwissprotQ84WI01e-71GIS_ARATH; Zinc finger protein GIS
TrEMBLD7LVZ78e-80D7LVZ7_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__2251__AT3G58070.12e-79(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24951949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.14e-59C2H2 family protein