PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9776s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 157aa    MW: 18545 Da    PI: 10.2589
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9776s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.22.6e-092612232127
                  NAM  32 evikevdiykvePwdL..pkkvkaeekewyfFskrdkkyatgkrknratk....sgyWkatgkdkevlskkgelvglkktLvfykgrapk 115
                            i ++++y+  P d   p +v+ + ++ + F++r + +++++++nra++    +g+W+   k k++++ ++++ g +++L f +  a +
  Araha.9776s0006.1.p  26 FLIGDFELYEKTPLDDdyPGNVYFSPHNFWCFVERTRLSPNSSQPNRAIRqnrcNGRWRYNSK-KPIIR-NTQTLGYREILDFVN--A-D 110
                          358999999999976511557777888999*****************97767779****8876.88888.899**********93..3.3 PP

                  NAM 116 gektdWvmheyr 127
                           +kt W   ey 
  Araha.9776s0006.1.p 111 NKKTGWRQSEYV 122
                          368****99996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.6741139IPR003441NAC domain
SuperFamilySSF1019414.05E-109128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MTTKRRSSIY MNFLLRLRGE RDRPDFLIGD FELYEKTPLD DDYPGNVYFS PHNFWCFVER  60
TRLSPNSSQP NRAIRQNRCN GRWRYNSKKP IIRNTQTLGY REILDFVNAD NKKTGWRQSE  120
YVKSVDDGTF QVVSVVLMML LISKNSSKRN HYSSDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9776s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744279