PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9655s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 225aa    MW: 24297.1 Da    PI: 8.8275
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9655s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-0580102123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C+k+Fs+   L  H  +H
  Araha.9655s0001.1.p  80 YKCSVCDKTFSSYQALGGHKASH 102
                          9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-1380104IPR007087Zinc finger, C2H2
SMARTSM003550.00380102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.20180107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-880102No hitNo description
Gene3DG3DSA:3.30.160.606.3E-480103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-8131158No hitNo description
PfamPF139127.7E-13136160IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099136163IPR007087Zinc finger, C2H2
SMARTSM003550.17136158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MALEALTSPR LASPIPPLFQ DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM  60
LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA SHRKNLSQTH SGGGDDQSTS  120
SATTTSAVTT GSGKSHVCTI CHKSFPSGQA LGGHKRCHYE GNNTSSVSNS EGAGSSSHVS  180
SSHRGFDLNI PPIPEFSTLN GDDEVMSPMP AKKARFDFPV KLQR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2503360.0AF250336.1 Arabidopsis thaliana zinc finger protein STZ/ZAT10 (STZ/ZAT10) mRNA, complete cds.
GenBankAC0123750.0AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankAY0630060.0AY063006.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds.
GenBankAY0349980.0AY034998.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds.
GenBankX955730.0X95573.1 A.thaliana mRNA for salt-tolerance zinc finger protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174094.11e-146zinc finger protein STZ/ZAT10
SwissprotQ962891e-148ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLD7KBU21e-140D7KBU2_ARALL; Putative uncharacterized protein
STRINGAT1G27730.11e-145(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-122salt tolerance zinc finger