PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9032s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 189aa    MW: 21855.7 Da    PI: 4.9179
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9032s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.7e-13431231198
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           k++++ +p +f+ ++g k   +  +tle++ g + ++++  ++ +++++++kGW++F++a+ L +g f+ F+++g+s+f  +v +f+
  Araha.9032s0005.1.p  43 IKEKMMKVPARFV-RFGPK--LTDNVTLETPVGFKRSIRI--KRIGDEVWFEKGWSDFAEAHFLSDGHFLFFHYKGDSCF--RVVIFD 123
                          5667899******.66633..5568***************..**************************************..888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-1928125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-1730125IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-1332123No hitNo description
PROSITE profilePS5086310.68733125IPR003340B3 DNA binding domain
SMARTSM010199.2E-1334125IPR003340B3 DNA binding domain
PfamPF023623.6E-1142123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRNMHTNRRS SARITSAATQ RRLKPEPEPA VKKFIKVILF KTIKEKMMKV PARFVRFGPK  60
LTDNVTLETP VGFKRSIRIK RIGDEVWFEK GWSDFAEAHF LSDGHFLFFH YKGDSCFRVV  120
IFDVSASEIE YPLDKVYVIE SDDDDDKEEV MAVMDDDEQR FTGFETSDDD GVIDLDDFVE  180
EEGTKSQH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0075041e-113AC007504.3 Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence.
GenBankCP0026841e-113CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500489.11e-101PREDICTED: B3 domain-containing protein At1g49475-like
SwissprotQ9XIB41e-101Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBLD7KEX55e-97D7KEX5_ARALL; DNA binding protein
STRINGAT1G49475.13e-99(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.15e-98B3 family protein