PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8819s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 780aa    MW: 86129.6 Da    PI: 7.9227
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8819s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.3e-18289388198
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+kvl+ sd+++ grlvlpk +ae++    ++++     l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++
  Araha.8819s0005.1.p 289 FEKVLSASDAGRIGRLVLPKACAEAYfppiSLPEGL--PLKIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSR 375
                          99**************************88777555..5***************9989999999***9.********************6 PP

                          -SSSEE..EEEEE- CS
                   B3  85 dgrsefelvvkvfr 98 
                          ++  e++lv++ ++
  Araha.8819s0005.1.p 376 TE-PEGKLVMGYRK 388
                          54.77777777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-29284393IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-20286389IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-22287388No hitNo description
PfamPF023622.1E-15289388IPR003340B3 DNA binding domain
SMARTSM010196.9E-20289389IPR003340B3 DNA binding domain
PROSITE profilePS5086310.955289390IPR003340B3 DNA binding domain
PROSITE profilePS5105014.748518568IPR011124Zinc finger, CW-type
PfamPF074964.6E-13523565IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG SAYEQSIFCE VFHAEESGWR  60
ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLF SMNVSHISNG RDFPSFASAE  120
HVGSVLERTN LKHLLHFQRI DPTQSSLQMK QEESLLPSRL DALRHKTERK ELQELSAQPN  180
LSISLGPTLM TSPFHDAAVD DRSKTNSIFQ LAPRSRQLLP KPANSAPIAA GMEPSGSLVS  240
QIHVARPPPE GRGKTQLLPR YWPRITDQEL LQLSGQYPHL SNSKIIPLFE KVLSASDAGR  300
IGRLVLPKAC AEAYFPPISL PEGLPLKIQD IKGKEWVFQF RFWPNNNSRM YVLEGVTPCI  360
QSMQLQAGDT VTFSRTEPEG KLVMGYRKAT NSTATQMFKG SSEPNLNMFS NSLNPGCGDI  420
NWSKLEKSED MAKDNLFLQS SLTSARKRVR NIGTKSKRLL IDSVDVLELK ITWEEAQELL  480
RPPQSAKPSI FTLENQDFEE YDEPPVFGKR TLFVSRQTGE QEQWVQCDAC GKWRRLPVDI  540
LLPPKWSCSD NLLDPGRSSC SAPDELSPRE QDTLVRQSKE FKRRRLASSN EKLNQSQEAS  600
ALDTLGNAGI TTTGEQGEIT VAATTKHPRH RAGCSCIVCS QPPSGKGKHK PSCTCTVCEA  660
VKRRFRTLML RKRNRGEAGQ ASQQAQSQSE CRDETEVESI PAIEPAAGEN IDLNSDPGAS  720
RVSMMRLLQA AAFPLEAYLK QKAISNTGGE QQSSDMVSTE QGSSSAEKDT RNGAHDPVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1428839213120DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1581585KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2065540.0AB206554.1 Arabidopsis thaliana HSI2-L1 mRNA for transcription factor B3-EAR motif family, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869299.10.0transcriptional factor B3 family protein
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLD7MAS90.0D7MAS9_ARALL; Transcriptional factor B3 family protein
STRINGscaffold_700997.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72032639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1