PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7846s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 289aa    MW: 33130.1 Da    PI: 10.6051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7846s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.76e-2019113199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkvl + d +++++  lp +f+++++++ e s +++++ ++g sWev++  +k+++  ++ ++GW +Fv++n L +++f++F+++g+++
  Araha.7846s0004.1.p  19 FFKVLQRVDFSSENMRALPYDFVRSFSNN-ELSGKMKIKARWGSSWEVEI--CKNPRFyFMEKSGWVKFVRDNALGDNEFLTFTHKGKMR 105
                          99***********************9877.5777****************..******555569********************999999 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          f  +v +f++
  Araha.7846s0004.1.p 106 F--TVNIFKQ 113
                          9..9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1913115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2015119IPR015300DNA-binding pseudobarrel domain
CDDcd100179.48E-2018112No hitNo description
PROSITE profilePS5086313.74719114IPR003340B3 DNA binding domain
SMARTSM010195.4E-2319114IPR003340B3 DNA binding domain
PfamPF023628.1E-1919113IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-17191286IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-13191287IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.404195288IPR003340B3 DNA binding domain
SMARTSM010194.4E-10198286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MARNSDYDLC KEERKRESFF KVLQRVDFSS ENMRALPYDF VRSFSNNELS GKMKIKARWG  60
SSWEVEICKN PRFYFMEKSG WVKFVRDNAL GDNEFLTFTH KGKMRFTVNI FKQDGKEMLQ  120
PPQSMASMSS SRRTKTEQGI SCLATTITAE SNGGGNYKRK LNFGKKKAAE SQNSKRTEKD  180
FSVRKDSAGA SSSSVAEFTT FIKKSYLIFM RIPKSVQSIH MPMQRTIFKI HHPNMKKSWN  240
VVYLVADRGA SFSGGWKRLA QEYPVAVGDT CKFSFIKQHE LILSVLKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0203530.0BT020353.1 Arabidopsis thaliana At2g35310 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879545.10.0transcriptional factor B3 family protein
SwissprotQ5PNU41e-173Y2531_ARATH; B3 domain-containing protein At2g35310
TrEMBLD7LHU80.0D7LHU8_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.4__1555__AT2G35310.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.11e-165B3 family protein