PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.69862s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 252aa    MW: 29644.5 Da    PI: 8.1562
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.69862s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551e-171151343
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                          i n+s r+ tf kR++g++KK +ELS+LC++ ++ ii+s+ 
  Araha.69862s0001.1.p 11 IPNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPY 51
                          889************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.437149IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-25160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-25295IPR002100Transcription factor, MADS-box
CDDcd002661.13E-23285No hitNo description
PRINTSPR004042.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MTRKKVKLAY IPNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTSPEVWPS  60
NSGVQRVVSE FRTLPEMDQQ KKMVDQESFL KQRIAKATEN LRRQRKDNRE LEMSEVMFQC  120
LIGNMEMFHL NIVDLNDLGY MIEQYLKDVG SSSSAAVANF FNPIEHQQFR HPAVQHVGLN  180
EQPWNLNLNL NQNHNQNQQQ WFMEMMNHPE QMRYPTEQMG FQFMDDNHQN HIHHQQQEHQ  240
HHTPSESFNR S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYIPNDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.69862s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8306920.0AB830692.1 Arabidopsis halleri subsp. halleri AGL80 gene for agamous-like MADS-box protein AGL80, partial cds, isolate: e060.
GenBankAB8306930.0AB830693.1 Arabidopsis halleri subsp. tatrica AGL80 gene for agamous-like MADS-box protein AGL80, partial cds, isolate: e061.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871231.11e-141agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-123AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLS6AXX51e-144S6AXX5_ARAHH; Agamous-like MADS-box protein AGL80 (Fragment)
TrEMBLS6BCG91e-144S6BCG9_ARAHA; Agamous-like MADS-box protein AGL80 (Fragment)
STRINGAT5G48670.11e-122(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-114AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]