PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6755s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 175aa    MW: 20721.3 Da    PI: 9.9429
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6755s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.13.2e-101214012128
                  NAM  12 eelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                          + +v  yLk  +++  +   +++++ d+y  +Pw+L      +    +   yfF++r+ ++    ++    + g W+  g+dk ++s  +
  Araha.6755s0003.1.p  12 DAIVATYLKMMIDNVIVWPRHFLRSQDVYCKNPWTLFVtrdpM--VLQAGGYFFVNRSVNSG---KTDG-CEYGCWRIIGSDKVIKSVtT 95 
                          568999**99999999777678**************6322221..234567****9987653...3443.578************99878 PP

                  NAM  97 gelvglkktLvfy.............kgrapkgektdWvmheyrl 128
                          g+  glkk+  f               ++++   k  W m+eyr+
  Araha.6755s0003.1.p  96 GKILGLKKVYKFCkteeprsfikfveMEKRRARDKRIWAMEEYRF 140
                          8889********9666666665555424445556999******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.5331156IPR003441NAC domain
SuperFamilySSF1019413.14E-2311154IPR003441NAC domain
PfamPF023655.1E-811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MMKSIRDQSI EDAIVATYLK MMIDNVIVWP RHFLRSQDVY CKNPWTLFVT RDPMVLQAGG  60
YFFVNRSVNS GKTDGCEYGC WRIIGSDKVI KSVTTGKILG LKKVYKFCKT EEPRSFIKFV  120
EMEKRRARDK RIWAMEEYRF ASAWKQDYVI CKIRLLDPQP FEYMLSHHIR GYYK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6755s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0257390.0BT025739.1 Arabidopsis thaliana At1g60240 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT13D80.0AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891776.11e-126uncharacterized protein LOC9322697
TrEMBLD7KXB11e-125D7KXB1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__426__AT1G60240.11e-126(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161941114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60240.11e-108NAC family protein