PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5541s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 302aa    MW: 34144.5 Da    PI: 7.5481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5541s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.6e-06143162120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C k+F+r  nL+ H+
  Araha.5541s0001.1.p 143 FSCHVCFKTFNRYNNLQMHM 162
                          89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-5125165No hitNo description
PROSITE profilePS5015710.055143170IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-4143162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
SuperFamilySSF576679.56E-5212247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MESPLYEISS SSSSEKPRHH FQSLDLFPNL NQNSCTNNNL IEPLPLIDRI NLNSNLDLNP  60
KPLYAEEGEQ EEEEEEDDGE VDVNLHIGLP GFGKSGDGAK ELKKKNGKEI ATYDAGRDIE  120
NEVSGKAYWI PAPEQILIGF THFSCHVCFK TFNRYNNLQM HMWGHGSQYR KGPESLKGTQ  180
PRAMLGIPCY CCVEGCRNHI DHPRSKPLKD FRTLQTHYKR KHGHKPFSCR ICGKLLAVKG  240
DWRTHEKNCG KRWVCVCGSD FKHKRSLKDH VKAFGPGHGP YPTGLFEEQA SNSSVSETLF  300
F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304770.0AJ630477.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g34790.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891159.10.0At1g34790
SwissprotQ8VWG30.0TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLD7KL360.0D7KL36_ARALL; At1g34790
STRINGfgenesh2_kg.1__3606__AT1G34790.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.10.0C2H2 family protein