PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5131s0009.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 290aa    MW: 33806 Da    PI: 10.2449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5131s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05232254123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+Cp+C+ +F ++  +  H+ +H
  Araha.5131s0009.1.p 232 YTCPKCNGVFDTSQKFAAHMLSH 254
                          9*******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0086232254IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411232259IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSYIPNRFNI DGGDTTNHRE SLPIEMNHNS KMVHSMFITS DRMNHRDSFS SPPSFSSYQN  60
SHVSSSYVGF NNSHMTKRNI DSISRANYFP TKDKYHFTQV SFTQTIINRY TTIVPSDLFN  120
NVHYDIERVK RAMDSTNTWN PISHLPKFLD NQSGILKPTP LNIVFPHQDF ADRQHLDMVS  180
LPSKYNRVSQ AGRSLKTIPK PTNIFEKITS YIDDDHYDGR THSLPYKKFG PYTCPKCNGV  240
FDTSQKFAAH MLSHYNSETN KERDQRLRAR NKKRYRKFME SLKRSKQKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279284ESLKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865500.10.0hypothetical protein ARALYDRAFT_917478
TrEMBLD7MS140.0D7MS14_ARALL; Putative uncharacterized protein
STRINGscaffold_800878.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42640.11e-149C2H2 family protein