PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.51150s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 216aa    MW: 24840.7 Da    PI: 5.4009
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.51150s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.4e-162741895
                          --HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                    B3 18 lpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                          +p +f+ +h + ++e++t  l++  s  +Wevk+  +++s+r  lt+GWkeF+ a++ ++gD++vF++dg+  f  +v+
  Araha.51150s0001.1.p  2 IPVTFFLKHVERSNEQRTANLRSdASDTTWEVKI--DGRSRR--LTGGWKEFATAHDFRVGDIIVFRHDGDLVF--HVT 74
                          8999*99**656667789999987889*******..****99..9**********************8886555..555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.535179IPR003340B3 DNA binding domain
CDDcd100171.32E-12274No hitNo description
PfamPF023622.5E-11269IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-17285IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-9279IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-19289IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-8151213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-8153216IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.318157216IPR003340B3 DNA binding domain
CDDcd100171.25E-9157216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
NIPVTFFLKH VERSNEQRTA NLRSDASDTT WEVKIDGRSR RLTGGWKEFA TAHDFRVGDI  60
IVFRHDGDLV FHVTALGPSC CEIQYVQSCN DDDNLDDDQE DIRNLPMEQS LKTELEAEPS  120
LDDDDEDDNM GKLLRKKHVN KRIPETEAKC FSSDQSCFVA HVTDSNLRKD SLSLPRKFVR  180
TDGLNKGTNK IVLVNEGART WTLILKFRDS RRSFYM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5152631e-81AJ515263.1 Arabidopsis thaliana mRNA for putative auxin response factor 25 (arf25 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869318.11e-119hypothetical protein ARALYDRAFT_328561
SwissprotQ8H2D01e-106REM7_ARATH; B3 domain-containing protein REM7
TrEMBLD7MB431e-119D7MB43_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_70007881e-119(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.11e-102B3 family protein