PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5052s0042.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 374aa    MW: 43489.7 Da    PI: 4.055
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5052s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.41.7e-1651242114
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrk..nr.atksgyWka 85 
                          p+G rF P+d  lv +yL++ ve+k+ ++   i+++d+y+ ePw+Lp+ v++   ++k wy+F++  k+ ++ +rk   r   + g+W++
  Araha.5052s0042.1.p   5 PVGSRFVPNDLGLVRFYLRNMVERKQSSF---ITTMDVYDDEPWHLPH-VNNplfKNKVWYYFVPLTKRGSSVQRKvpGReGSEGGTWRS 90 
                          89***********************9666...9**************4.333355889*******99987765544115645789***** PP

                  NAM  86 tgkdkevlskkgel.....vglkktLvfykgrap 114
                             ++e+++ ++ +        ++ Lv+ + r +
  Araha.5052s0042.1.p  91 NDGKEEIKDGHKMEyslhkSDEQQKLVLCRIRYK 124
                          9999999996333333333555555666554444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-223124IPR003441NAC domain
PROSITE profilePS5100519.4344169IPR003441NAC domain
PfamPF023651.0E-85110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MKSFPVGSRF VPNDLGLVRF YLRNMVERKQ SSFITTMDVY DDEPWHLPHV NNPLFKNKVW  60
YYFVPLTKRG SSVQRKVPGR EGSEGGTWRS NDGKEEIKDG HKMEYSLHKS DEQQKLVLCR  120
IRYKKKKKVN KIRRVNHQAH QTQVAENTNN ILQSQSVQEE ADLTGLPDEL EKMPEGQEDR  180
EEQEEVDLTD FPDELETMLE GQEDREEQEE VDLTDFPDEL ETMLEGQEDC EQQQEAELTG  240
FSDDPESMLL DGEEDRDVTQ QQQQQQQQEE EIPVPTPMQN NNNNNNVVMM MSNQQVQEEA  300
AGLIGLADDF AMTLLEGQED RDVTQQQQQQ QEEDDMMVLM DNPNDALALG NYEFVDLTWV  360
DEISDTIQRR EKY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5052s0042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869775.10.0NAC domain-containing protein 6
SwissprotQ9LR741e-107NAC6_ARATH; NAC domain-containing protein 6
TrEMBLD7KD970.0D7KD97_ARALL; Uncharacterized protein
STRINGscaffold_100350.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.15e-87NAC domain containing protein 6