PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4834s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 338aa    MW: 38635 Da    PI: 8.74
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4834s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05180199120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          + C++C+k+F+r  n++ H+
  Araha.4834s0001.1.p 180 FACSICSKTFNRYNNMQMHM 199
                          78*****************9 PP

2zf-C2H210.90.0014265287123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cgk    k + ++H +++
  Araha.4834s0001.1.p 265 FSCGKCGKALAVKGDWRTHEKNC 287
                          89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-9159203No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5180199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.45180207IPR007087Zinc finger, C2H2
SMARTSM003550.17180202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SMARTSM00355170228260IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.99E-5250285No hitNo description
Gene3DG3DSA:3.30.160.609.3E-4251285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190265285IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538285318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSLMNPYEKG LSFESPSFIE WLEPPSSTSV LYRMNTRDAM SRSSHHQSQK NMLERSLFLY  60
QPQEPLNTSI QCLPLLNKLM ENKSRQALDD IKEESKDDVV TLQIGFPKYH RGSSDDDSDT  120
TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEITGSDVEV CGKRFWIPSP AQIHVGPMQF  180
ACSICSKTFN RYNNMQMHMW GHGSEFRKGA DSLKGTTQPA AILRLPCYCC AEGCKNNINH  240
PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK  300
HKRSLKDHIR SFGSGHSPLP SLSFDGFEED TECVTTE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141145KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544480.0AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBankAY0909180.0AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.
GenBankAK1188510.0AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488679.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLD7KI090.0D7KI09_ARALL; Zinc finger protein
STRINGAT1G08290.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.10.0WIP domain protein 3