PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4808s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 288aa    MW: 32592.3 Da    PI: 10.0922
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4808s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.53.8e-2119113199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkvl + dv+++++  lp +f+ ++  +ke s++++++ ++g sWev +  +k+++ y+l+ +GW +Fv++n L  ++f++F+++g+++
  Araha.4808s0002.1.p  19 FFKVLRSLDVSSENLRALPHDFV-RCFTDKELSRKMKIRAQWGSSWEVAI--SKNPRFYYLEkSGWGKFVRDNALGNNEFITFTHKGKMR 105
                          99*********************.666678899*****************..******777759********************999999 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          f  +v +f++
  Araha.4808s0002.1.p 106 F--TVNIFKQ 113
                          9..9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-2113115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-2114120IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-1817112No hitNo description
SMARTSM010196.8E-2219114IPR003340B3 DNA binding domain
PfamPF023622.4E-1919113IPR003340B3 DNA binding domain
PROSITE profilePS5086313.94419114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-14186282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-11186283IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.629190283IPR003340B3 DNA binding domain
SMARTSM010193.9E-12193283IPR003340B3 DNA binding domain
CDDcd100175.89E-7207282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAINPDYLRC KEERTNKSFF KVLRSLDVSS ENLRALPHDF VRCFTDKELS RKMKIRAQWG  60
SSWEVAISKN PRFYYLEKSG WGKFVRDNAL GNNEFITFTH KGKMRFTVNI FKQDGKEMMQ  120
PPQSSSFLAS SSRGIKTEQR EDDKKEEVVV SSELSPTTAA ESNGGTSKRN LNLGKKKARG  180
DSAGASSSSV AEFTIFIRRS YLRILPIPTA FDKAYMPKKN AMFKIHHPDG KRSWNVTYLA  240
STTVGFSAGW ICLIKEYPIA AGDTCKFTLI KPDELLLVVL RPEEETE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885973.11e-147predicted protein
SwissprotQ5BPT71e-125Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7L4F01e-147D7L4F0_ARALL; Predicted protein
STRINGAl_scaffold_0003_34351e-146(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.11e-115B3 family protein