PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.47358s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 185aa    MW: 20500.9 Da    PI: 9.6721
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.47358s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.11.2e-2813147489
                   TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg.. 88 
                           ++++ +++h k ggRdRR+R++ ++a ++F+L++eLGf++d++t+ WLl++a+pai ++tg   s++++  + ++s s+s++    +  
  Araha.47358s0002.1.p  13 ATRTPKDRHVKIGGRDRRIRIPPSIAPQVFKLTKELGFKTDGETVGWLLRNAEPAIFAATGHgvSTTPSDVSVTHSYSNSQNYT--Ncg 99 
                           56778*********************************************************7644444233333333333312..133 PP

                   TCP  89 ...............................................k 89 
                                                                          +
  Araha.47358s0002.1.p 100 nnltinggqiscvnnnffrysitntghhemvfpgatiteygassilpA 147
                           455566667777777777777777777777777777777777766652 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-2517146IPR005333Transcription factor, TCP
PROSITE profilePS5136923.371771IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDSRNEINNR QKATRTPKDR HVKIGGRDRR IRIPPSIAPQ VFKLTKELGF KTDGETVGWL  60
LRNAEPAIFA ATGHGVSTTP SDVSVTHSYS NSQNYTNCGN NLTINGGQIS CVNNNFFRYS  120
ITNTGHHEMV FPGATITEYG ASSILPAKDK EGVSSQNQKQ QQPQFELGKV EMVADEKTYV  180
WRKE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00390DAPTransfer from AT3G45150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026862e-74CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankAL1386492e-74AL138649.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875715.13e-89hypothetical protein ARALYDRAFT_905662
SwissprotQ9M1U48e-56TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL83e-89D7LNL8_ARALL; Putative uncharacterized protein
STRINGscaffold_501366.19e-89(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.12e-43TCP domain protein 16