PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.42598s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 215aa    MW: 23118.1 Da    PI: 6.8985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.42598s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-0590112123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ykC+ CgksF++   L  H  +H
  Araha.42598s0003.1.p  90 YKCSVCGKSFPSYQALGGHKTSH 112
                           9***********99998888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-988112No hitNo description
Gene3DG3DSA:3.30.160.602.0E-488112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002290112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78390117IPR007087Zinc finger, C2H2
PfamPF139121.3E-1490114IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-9143170No hitNo description
PfamPF139122.8E-12147172IPR007087Zinc finger, C2H2
SMARTSM003551.2148170IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871148170IPR007087Zinc finger, C2H2
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MALDTLNSPT STSTTTAPPP FLDETESENL ESWTKRKRTK RHRIDQPNPP NEEEYLALCL  60
LMLARGSSDH HSSPSDHHSL SPPSDQQKDY KCSVCGKSFP SYQALGGHKT SHRKPVSINN  120
DDANNSNGSV TNNGNISNGL VGQSGKTHNC SICFKSFPSG QALGGHKRCH YDGGNGNGNG  180
DNSHRFDLNL PADQVSDETL GKSQLSGEET KSVL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.42598s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329780.0AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBankBT0293770.0BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190562.11e-120C2H2 and C2HC zinc fingers superfamily protein
SwissprotQ9SSW12e-65AZF1_ARATH; Zinc finger protein AZF1
TrEMBLQ9SN241e-118Q9SN24_ARATH; At3g49930
STRINGAT3G49930.11e-119(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-93C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]