PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4020s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 227aa    MW: 25232.2 Da    PI: 8.5874
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4020s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001680102123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ C+k Fs++  L  H++ H
  Araha.4020s0002.1.p  80 FACTFCKKEFSTSQALGGHQNAH 102
                          78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-577106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.48E-677107No hitNo description
PfamPF139125.8E-679104IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.65580107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MELNLSTPTS CSSSSISSSS HEVIPRTKGK LKEKVTAEPS KETPRLEFRF LFDESTRSHP  60
GFGVLDEAEG TRNEAKARVF ACTFCKKEFS TSQALGGHQN AHKQERSLAK RRKEIEINYP  120
GLSFYSQYPP SGVSYSSSSS QYDLGVRYNP NIAKTKPYPF NIFTCRLGYR GLNIPLLSHL  180
SVPKTDDFSK NLISNLEGSI HDQAEKKDQP DTDPSKDSDI DLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAL1623510.0AL162351.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA project).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872989.11e-140zinc finger family protein
TrEMBLD7M6E61e-140D7M6E6_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.6__17__AT5G01860.11e-140(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.11e-102C2H2 family protein