PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.39122s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 202aa    MW: 22436.6 Da    PI: 9.8718
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.39122s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012527123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          +kC+ C+ksF +   L  H+++H
  Araha.39122s0003.1.p  5 HKCKLCSKSFCNGRALGGHMKSH 27
                          79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.7E-5328No hitNo description
PfamPF139126.2E-6527IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598527IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSTRKKLG DSVYSSSSSS SDGKALVYGL  60
RENPRKSFRV FNPDPESSTV YNSETETEPE SGDPVKKRVR AYVSKKKKKA KSKSKKQKTS  120
HESPEPASSV SDGSPEQDLA MCLMMLSRDS RELEIKLKKP VFEEEEMKPE KIHFPELRRC  180
MIDLNLPPPQ DAEAVTVVSA I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104115KKKKKAKSKSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.39122s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615440.0AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankBT0041860.0BT004186.1 Arabidopsis thaliana clone RAFL15-32-J24 (R50122) unknown protein (At4g16610) mRNA, complete cds.
GenBankBT0053920.0BT005392.1 Arabidopsis thaliana clone U50122 unknown protein (At4g16610) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973410.0Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868113.11e-122zinc finger protein ZAT9
TrEMBLD7MCD91e-120D7MCD9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__2648__AT4G16610.11e-121(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95101421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.11e-109C2H2-like zinc finger protein