PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.38299s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 249aa    MW: 27584.3 Da    PI: 8.3649
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.38299s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-06220242223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp+C++ F+++ +L +Hi + H
  Araha.38299s0002.1.p 220 VCPKCSRGFRDPVDLLKHIDKdH 242
                           7******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.14E-12457No hitNo description
PROSITE profilePS510397.8371059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.3E-101150IPR000058Zinc finger, AN1-type
PfamPF014281.2E-131349IPR000058Zinc finger, AN1-type
SMARTSM001541.6E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.0E-991147IPR000058Zinc finger, AN1-type
SuperFamilySSF1183103.66E-993145No hitNo description
PROSITE profilePS510398.05198151IPR000058Zinc finger, AN1-type
PfamPF014285.8E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.0047101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.891219247IPR007087Zinc finger, C2H2
PROSITE patternPS000280221242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CLQVFCLDHR SYMKHDCPKG NRGDVTVVIC  60
PLCAKGVRLN PDEDPNITWE KHVNTDCDPS NYEKAVKKKK CPVPRCRELL TFSNTIKCRD  120
CSIDHCLKHR FGPDHSCSGP KKPESSFSFM GFLSTNTKEA PPSSSSSRWS SLFASAEASI  180
SRLGNDISQK LQFASGSDGN SGKTQERNGK QNCGKVTVDV CPKCSRGFRD PVDLLKHIDK  240
DHRGTSKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0062230.0BT006223.1 Arabidopsis thaliana At3g57480 gene, complete cds.
GenBankAK1190960.0AK119096.1 Arabidopsis thaliana At3g57480 mRNA for unknown protein, complete cds, clone: RAFL21-44-N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191307.11e-172zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ9SCM41e-174SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLD7LVT61e-171D7LVT6_ARALL; Putative uncharacterized protein
STRINGAT3G57480.11e-172(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-170C2H2 family protein