PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.36669s0003.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 721aa    MW: 80208.3 Da    PI: 8.3146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.36669s0003.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-16328427198
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 
                           f+k l+ sd++  gr+vlpkk+ae++  ++++++++ lt++d+ g++W+++++++ ++++  yvl+ G     ++ +L++gD+v+F++ 
  Araha.36669s0003.4.p 328 FEKMLSASDTGIVGRVVLPKKCAEAFlpQLSHTQGVPLTVQDPMGKEWTFQFRFWPSRNSriYVLE-GVTPCIQSLQLQAGDTVIFSRL 415
                           8999************************9999**********************777777768888.********************66 PP

                           SSSEE..EEEEE- CS
                    B3  86 grsefelvvkvfr 98 
                           +  e++l +++++
  Araha.36669s0003.4.p 416 D-PERKLILGFRK 427
                           5.66667777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-25320430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-17325427IPR015300DNA-binding pseudobarrel domain
CDDcd100178.90E-20326427No hitNo description
SMARTSM010191.2E-17328429IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56328429IPR003340B3 DNA binding domain
PfamPF023622.3E-13328427IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MLSSSSMSSS SLSARFCFNH ECFEFKLDHC RPGWRLRSGD FVDLCDRCAS AYEQGQFCDV  60
FHQRASGWRC CESCGKQIHC GCIVSASAFT LLDAGGIECL ACARKKVALG SNFSPSPSFL  120
FQSPISEKFN DLSINWSSST RSNQISYQPP SYLGPSALQF DLCNRGGNNE FSQPTSKDRA  180
TACPMGKKRG MNDMIGKLMS ENSKHYKVSP FPNVNLYHPL ISIKEGPCGT QLAFPVPITT  240
PIEKTGHSRL DGSNLWHTPN SSPLSRLHND LNGGSDSPFE SKSRNVRTHL DTPGKYQVVP  300
RYWPKVSYKN QVLQNQSKES ESVLTPLFEK MLSASDTGIV GRVVLPKKCA EAFLPQLSHT  360
QGVPLTVQDP MGKEWTFQFR FWPSRNSRIY VLEGVTPCIQ SLQLQAGDTV IFSRLDPERK  420
LILGFRKASV TRSSDQAETA DMHSPSKVKK SAYITKESPG VECSSGKKKS SMMITRSKRQ  480
KVEKGDHNLL KLTWEEAQGF LLPPPNLTPS RVVIEDYEFE EYEDAPIIGK PTDAAGSTCT  540
EVEGLLISPT TTKHPRHRNG CTCIVCIQSP SGIGPKHDRR CSCAVCETNK RRRRSLLLRR  600
EKMQMEKEDN AHKELEQLNS DNGLHQSANN SENHECHDSP ERHASSLKSQ LDLNFKPEKD  660
EESLPGSNKT TENKTFHHND TVNSSFKSPS SSSAHSQINK EDEGKLRKNT EVADTTTSSM  720
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankAL1615550.0AL161555.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55.
GenBankAL0226030.0AL022603.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869883.10.0hypothetical protein ARALYDRAFT_914517
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLD7MES50.0D7MES5_ARALL; Putative uncharacterized protein
STRINGscaffold_702259.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3