PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.36352s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 273aa    MW: 30214.5 Da    PI: 6.1726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.36352s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.6e-05104126123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C ++F ++  L  H++ H
  Araha.36352s0005.1.p 104 FSCNYCQRTFYSSQALGGHQNAH 126
                           89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.38E-799131No hitNo description
Gene3DG3DSA:3.30.160.608.5E-4102130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.635104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDSSSGKPRS SDSSCIVSAS TTLPFPDSPK LSLNNYNIDE EAAQEEDDHD QKEGQEGIRL  60
ELMLAGYDSS KPQFNQELNL LNCLEAGVVT PSFNGSSSTE QKLFSCNYCQ RTFYSSQALG  120
GHQNAHKRER TLAKRGQRMA SAAAFGHPYG FAPVPFHGQY SNRSLGIQAH SMSHKLSSYN  180
VFGGEYGQIN WSRIPLVQQP AIGKLTSTEN HYNHHQMMVA PPLTSTCENI GRFDVGRIPV  240
DFPTSELWQR GEELLKPAEE EQQKNLDLSL KL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.36352s0005.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937450.0AB493745.1 Arabidopsis thaliana At5g10970 mRNA for hypothetical protein, partial cds, clone: RAAt5g10970.
GenBankAL3652340.0AL365234.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project).
GenBankAL3912220.0AL391222.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871446.10.0zinc finger protein 3
SwissprotQ392622e-78ZFP3_ARATH; Zinc finger protein 3
TrEMBLD7M3K40.0D7M3K4_ARALL; Zinc finger family protein
STRINGscaffold_601111.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-174C2H2 family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Zhang A, et al.
    The Arabidopsis Gene zinc finger protein 3(ZFP3) Is Involved in Salt Stress and Osmotic Stress Response.
    PLoS ONE, 2016. 11(12): p. e0168367
    [PMID:27977750]