PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3440s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 163aa    MW: 18993.4 Da    PI: 9.7935
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3440s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.49.6e-2237852128
                  NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k++++ w+fF ++++ky++g+r+ r+tksg+Wk+tg + ++++k  ++e++g kk+L+fy    +k++k+dWvmhey++
  Araha.3440s0003.1.p   3 KSSDEVWHFFGRKENKYNRGDRQMRKTKSGFWKKTGVTINIMRKrgNREKIGEKKVLMFYF---NKSRKSDWVMHEYHA 78 
                          677899*************************************9877888**********4...44568********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.861196IPR003441NAC domain
SuperFamilySSF1019413.27E-24396IPR003441NAC domain
PfamPF023652.8E-11977IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MIKSSDEVWH FFGRKENKYN RGDRQMRKTK SGFWKKTGVT INIMRKRGNR EKIGEKKVLM  60
FYFNKSRKSD WVMHEYHATF SSPNLMTYTL CKVKFKGESR EVSVSSGSGI GLTHSLIPHT  120
NDFGAFSVET EEETQLEDAV RRAINNISTD DWDSLFYDDE QR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3440s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866030.11e-108LOW QUALITY PROTEIN: NAC domain-containing protein 5
SwissprotO819146e-68NAC5_ARATH; NAC domain-containing protein 5
TrEMBLD7KB651e-110D7KB65_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10001231e-111(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.18e-61NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]