PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.33985s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 256aa    MW: 28559 Da    PI: 8.3036
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.33985s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025527123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          +kC+ C ksF +   L  H+r+H
  Araha.33985s0005.1.p  5 HKCKLCWKSFANGRALGGHMRSH 27
                          79********************9 PP

2zf-C2H212.30.00051145167123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C k+F++   L  H  +H
  Araha.33985s0005.1.p 145 FECETCEKVFKSYQALGGHRASH 167
                           89***********9999998887 PP

3zf-C2H215.74.4e-05195217123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp+C+k+Fs+   L  H r+H
  Araha.33985s0005.1.p 195 HECPICSKVFSSGQALGGHKRSH 217
                           79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.7E-4427IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.1E-7428IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-9427No hitNo description
PROSITE profilePS5015710.512532IPR007087Zinc finger, C2H2
SMARTSM003550.02527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-9140167No hitNo description
PfamPF139121.1E-11145170IPR007087Zinc finger, C2H2
SMARTSM003550.087145167IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.803145172IPR007087Zinc finger, C2H2
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
SuperFamilySSF576671.92E-5193219No hitNo description
PfamPF139123.9E-13194217IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45195222IPR007087Zinc finger, C2H2
SMARTSM003550.014195217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEERHKCKLC WKSFANGRAL GGHMRSHMLI HPVPSQPESA SSSMADPLQD RESETESSKK  60
PTRKRSRLNR RSNEEGKSET AGAAEIKIGV QELSESCTEQ EPMSSVSDAA TEEEDVALSL  120
MLLSRDKWEK EDEERGKKKR NNKWFECETC EKVFKSYQAL GGHRASHRKK RAETDQLVSD  180
ELKKKKKKTS TTSHHECPIC SKVFSSGQAL GGHKRSHASA SNNESTIRRS GIIISLIDLN  240
LPAPSEEEDM ASSVF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168187KKRAETDQLVSDELKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankX986690.0X98669.1 A.thaliana zat1 gene.
GenBankU899590.0U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889341.11e-151hypothetical protein ARALYDRAFT_333455
SwissprotQ390921e-146ZAT1_ARATH; Zinc finger protein ZAT1
TrEMBLD7KP501e-151D7KP50_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10000201e-150(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.11e-138C2H2-like zinc finger protein